STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jann_3096Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose. (541 aa)    
Predicted Functional Partners:
Jann_1386
Class II aldolase/adducin-like protein.
 
 
 0.912
Jann_3497
3-beta hydroxysteroid dehydrogenase/isomerase.
     
  0.800
rhaM
Protein of unknown function DUF718; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.682
Jann_3095
Transcriptional regulator, AraC family.
 
     0.641
Jann_2592
Short-chain dehydrogenase/reductase SDR.
 
     0.519
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
   
 0.510
Jann_0279
Class II aldolase/adducin-like protein.
  
  
 0.463
Jann_0873
Class II aldolase/adducin-like protein.
  
  
 0.463
Jann_1395
Class II aldolase/adducin-like protein.
 
     0.459
Jann_1467
Oxidoreductase-like protein.
  
     0.401
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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