STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jann_3731Transcriptional regulator, AraC family. (253 aa)    
Predicted Functional Partners:
Jann_1294
Transcriptional regulator, AraC family.
 
   0.564
Jann_3730
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
       0.559
Jann_3729
NIPSNAP.
       0.444
Jann_1777
OsmC-like protein.
  
  
 0.443
Jann_2616
AMP-dependent synthetase and ligase.
     
 0.442
Jann_2050
Transcriptional regulator, AraC family.
 
 
 0.439
Jann_3732
Transposase IS116/IS110/IS902.
       0.432
Jann_1359
Transcriptional regulator, GntR family.
  
  
 0.430
Jann_1940
Transcriptional regulator, GntR family.
  
  
 0.430
Jann_2856
Transcriptional regulator, GntR family.
  
  
 0.430
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.