STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jann_3963MATE efflux family protein. (457 aa)    
Predicted Functional Partners:
Jann_3962
Uncharacterized peroxidase-related protein.
 
     0.812
Jann_3964
Alcohol dehydrogenase zinc-binding protein.
   
 
 0.792
Jann_3959
Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.
 
     0.566
Jann_3960
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
 
    0.541
Jann_3958
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 
    0.507
Jann_3961
Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.
     
 0.504
crtB
Phytoene synthase.
   
 
 0.484
Jann_1962
Hypothetical protein.
   
 
 0.484
Jann_0721
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.450
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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