STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Paes_0471PFAM: permease; KEGG: cph:Cpha266_0757 permease. (357 aa)    
Predicted Functional Partners:
Paes_1116
TIGRFAM: redox-active disulfide protein 2; KEGG: cch:Cag_0399 redox-active disulfide protein 2.
 
  
 0.693
Paes_0470
PFAM: regulatory protein ArsR; KEGG: cte:CT0812 transcriptional regulator, ArsR family.
 
  
 0.663
Paes_0469
KEGG: cph:Cpha266_0294 hypothetical protein.
       0.465
Paes_0472
PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: cph:Cpha266_2534 protein of unknown function DUF900, hydrolase family protein.
       0.463
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.403
Paes_0886
ATP-dependent endonuclease of the OLD family-like protein; KEGG: lpc:LPC_2168 hypothetical protein.
   
    0.402
Your Current Organism:
Prosthecochloris aestuarii
NCBI taxonomy Id: 290512
Other names: P. aestuarii DSM 271, Prosthecochloris aestuarii DSM 271, Prosthecochloris aestuarii SK 413, Prosthecochloris aestuarii SK413/DSMZ 271(t), Prosthecochloris aestuarii str. DSM 271, Prosthecochloris aestuarii strain DSM 271
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