Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Paes_0898 | Paes_0899 | PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1969 cyclopropane-fatty-acyl-phospholipid synthase. | PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase. | 0.618 |
Paes_0898 | Paes_0900 | PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1969 cyclopropane-fatty-acyl-phospholipid synthase. | TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: plt:Plut_0667 sulphate anion transporter. | 0.442 |
Paes_0899 | Paes_0898 | PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase. | PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1969 cyclopropane-fatty-acyl-phospholipid synthase. | 0.618 |
Paes_0899 | Paes_0900 | PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase. | TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: plt:Plut_0667 sulphate anion transporter. | 0.541 |
Paes_0900 | Paes_0898 | TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: plt:Plut_0667 sulphate anion transporter. | PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1969 cyclopropane-fatty-acyl-phospholipid synthase. | 0.442 |
Paes_0900 | Paes_0899 | TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: plt:Plut_0667 sulphate anion transporter. | PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase. | 0.541 |