GOX0344 protein (Gluconobacter oxydans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GOX0344

Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family. (361 aa)

Predicted Functional Partners:

lexA

0.887

rnhB

0.814

GOX0624

0.698

GOX0346

0.480

GOX1953

0.401

GOX2154

0.400

Your Current Organism:

Gluconobacter oxydans

NCBI taxonomy Id: 290633
Other names: G. oxydans 621H, Gluconobacter oxydans 621H, Gluconobacter oxydans str. 621H, Gluconobacter oxydans strain 621H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GOX0344	GOX0346	GOX0344	GOX0346	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	Hypothetical protein.	0.480
GOX0344	GOX0624	GOX0344	GOX0624	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	Hypothetical protein.	0.698
GOX0344	GOX1953	GOX0344	GOX1953	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	5-Methylcytosine-specific restriction enzyme.	0.401
GOX0344	GOX2154	GOX0344	GOX2154	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	Hypothetical protein.	0.400
GOX0344	lexA	GOX0344	GOX2276	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.	0.887
GOX0344	rnhB	GOX0344	GOX0345	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.814
GOX0346	GOX0344	GOX0346	GOX0344	Hypothetical protein.	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.480
GOX0346	rnhB	GOX0346	GOX0345	Hypothetical protein.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.480
GOX0624	GOX0344	GOX0624	GOX0344	Hypothetical protein.	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.698
GOX1953	GOX0344	GOX1953	GOX0344	5-Methylcytosine-specific restriction enzyme.	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.401
GOX2154	GOX0344	GOX2154	GOX0344	Hypothetical protein.	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.400
lexA	GOX0344	GOX2276	GOX0344	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.887
rnhB	GOX0344	GOX0345	GOX0344	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.814
rnhB	GOX0346	GOX0345	GOX0346	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Hypothetical protein.	0.480