Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GOX1581 | GOX1849 | GOX1581 | GOX1849 | Hypothetical protein. | Putative oxidoreductase; Similar to complex I subunit M. | 0.586 |
GOX1581 | rpsC | GOX1581 | GOX0374 | Hypothetical protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
GOX1581 | rpsE | GOX1581 | GOX0363 | Hypothetical protein. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.996 |
GOX1581 | rpsH | GOX1581 | GOX0366 | Hypothetical protein. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
GOX1581 | rpsJ | GOX1581 | GOX0381 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
GOX1581 | rpsL | GOX1581 | GOX0384 | Hypothetical protein. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
GOX1581 | rpsM | GOX1581 | GOX0358 | Hypothetical protein. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
GOX1581 | rpsN | GOX1581 | GOX0367 | Hypothetical protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
GOX1581 | rpsQ | GOX1581 | GOX0371 | Hypothetical protein. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
GOX1581 | rpsS | GOX1581 | GOX0376 | Hypothetical protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
GOX1849 | GOX1581 | GOX1849 | GOX1581 | Putative oxidoreductase; Similar to complex I subunit M. | Hypothetical protein. | 0.586 |
GOX1849 | rpsC | GOX1849 | GOX0374 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.606 |
GOX1849 | rpsE | GOX1849 | GOX0363 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.591 |
GOX1849 | rpsH | GOX1849 | GOX0366 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.595 |
GOX1849 | rpsJ | GOX1849 | GOX0381 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.591 |
GOX1849 | rpsL | GOX1849 | GOX0384 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.605 |
GOX1849 | rpsM | GOX1849 | GOX0358 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.587 |
GOX1849 | rpsN | GOX1849 | GOX0367 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.620 |
GOX1849 | rpsQ | GOX1849 | GOX0371 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.608 |
GOX1849 | rpsS | GOX1849 | GOX0376 | Putative oxidoreductase; Similar to complex I subunit M. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.620 |
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