Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GOX1886 | GOX1887 | GOX1886 | GOX1887 | Putative translocase transmembrane protein. | Membrane-bound lytic murein transglycosylase. | 0.818 |
GOX1886 | GOX1888 | GOX1886 | GOX1888 | Putative translocase transmembrane protein. | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | 0.750 |
GOX1886 | GOX1889 | GOX1886 | GOX1889 | Putative translocase transmembrane protein. | Cytochrome c peroxidase. | 0.517 |
GOX1886 | secB1 | GOX1886 | GOX1885 | Putative translocase transmembrane protein. | Protein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.718 |
GOX1887 | GOX1886 | GOX1887 | GOX1886 | Membrane-bound lytic murein transglycosylase. | Putative translocase transmembrane protein. | 0.818 |
GOX1887 | GOX1888 | GOX1887 | GOX1888 | Membrane-bound lytic murein transglycosylase. | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | 0.773 |
GOX1887 | GOX1889 | GOX1887 | GOX1889 | Membrane-bound lytic murein transglycosylase. | Cytochrome c peroxidase. | 0.533 |
GOX1887 | secB1 | GOX1887 | GOX1885 | Membrane-bound lytic murein transglycosylase. | Protein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.536 |
GOX1888 | GOX1886 | GOX1888 | GOX1886 | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | Putative translocase transmembrane protein. | 0.750 |
GOX1888 | GOX1887 | GOX1888 | GOX1887 | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | Membrane-bound lytic murein transglycosylase. | 0.773 |
GOX1888 | GOX1889 | GOX1888 | GOX1889 | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | Cytochrome c peroxidase. | 0.537 |
GOX1888 | GOX2154 | GOX1888 | GOX2154 | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | Hypothetical protein. | 0.400 |
GOX1888 | lexA | GOX1888 | GOX2276 | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.900 |
GOX1888 | secB1 | GOX1888 | GOX1885 | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | Protein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.483 |
GOX1889 | GOX1886 | GOX1889 | GOX1886 | Cytochrome c peroxidase. | Putative translocase transmembrane protein. | 0.517 |
GOX1889 | GOX1887 | GOX1889 | GOX1887 | Cytochrome c peroxidase. | Membrane-bound lytic murein transglycosylase. | 0.533 |
GOX1889 | GOX1888 | GOX1889 | GOX1888 | Cytochrome c peroxidase. | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | 0.537 |
GOX2154 | GOX1888 | GOX2154 | GOX1888 | Hypothetical protein. | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | 0.400 |
lexA | GOX1888 | GOX2276 | GOX1888 | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Probable DNA-methyltransferase (DNA-modification methylase) protein; Belongs to the N(4)/N(6)-methyltransferase family. | 0.900 |
secB1 | GOX1886 | GOX1885 | GOX1886 | Protein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | Putative translocase transmembrane protein. | 0.718 |
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