STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF60LOW QUALITY PROTEIN: poly(U)-binding-splicing factor PUF60. (551 aa)    
Predicted Functional Partners:
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.947
SMNDC1
Survival of motor neuron-related-splicing factor 30 isoform X1.
   
 0.943
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.941
FUBP1
Far upstream element-binding protein 1 isoform X2.
   
 
 0.938
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.936
RBM17
RNA binding motif protein 17.
   
 
0.934
PHF5A
PHD finger-like domain-containing protein 5A.
   
 
 0.933
DDX46
LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46.
    
 0.930
SF3B3
Splicing factor 3B subunit 3.
    
 0.886
KHSRP
LOW QUALITY PROTEIN: far upstream element-binding protein 2.
   
 
 0.826
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.