STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCNM1Sodium channel modifier 1. (230 aa)    
Predicted Functional Partners:
ARMC7
Armadillo repeat-containing protein 7.
    
 
 0.797
SF3B3
Splicing factor 3B subunit 3.
    
   0.784
SF3B1
Splicing factor 3B subunit 1 isoform X1.
    
 
 0.781
RNF113A
RING finger protein 113A.
   
   0.766
CDC5L
Cell division cycle 5-like protein isoform X2.
    
   0.752
PRPF8
pre-mRNA-processing-splicing factor 8.
    
   0.752
SF3B2
Splicing factor 3B subunit 2 isoform X2.
    
   0.752
SF3B6
Splicing factor 3B subunit 6.
    
   0.699
ARHGEF10L
Rho guanine nucleotide exchange factor 10-like protein.
      
 0.635
MORN5
MORN repeat-containing protein 5.
      
 0.569
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.