STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (406 aa)    
Predicted Functional Partners:
FAM8A1
Protein FAM8A1.
    
 
 0.780
TMUB1
Transmembrane and ubiquitin-like domain-containing protein 1.
      
 0.776
RNF185
E3 ubiquitin-protein ligase RNF185.
      
 0.762
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.746
RNF170
E3 ubiquitin-protein ligase RNF170 isoform X1.
      
 0.739
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2 isoform X1.
      
 0.651
UBE2J1
Ubiquitin-conjugating enzyme E2 J1.
      
 0.637
ERLIN1
ER lipid raft associated 1.
      
 0.635
RNF5
E3 ubiquitin-protein ligase RNF5.
      
 0.579
C6orf120
UPF0669 protein C6orf120 homolog.
      
 0.511
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.