STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC130LOW QUALITY PROTEIN: coiled-coil domain-containing protein 130. (377 aa)    
Predicted Functional Partners:
PRPF19
pre-mRNA-processing factor 19.
    
   0.944
CDC40
pre-mRNA-processing factor 17.
    
 
 0.935
CDC5L
Cell division cycle 5-like protein isoform X2.
    
 
 0.934
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
    
   0.932
JUP
Junction plakoglobin.
   
   0.932
B3GAT3
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.
 
      0.796
WDR25
WD repeat-containing protein 25 isoform X1.
    
   0.788
GPATCH11
G patch domain-containing protein 11.
    
 
 0.729
NRDC
Nardilysin convertase.
      
 0.685
B3GAT1
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.
 
      0.670
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.