RASSF6 protein (Ursus maritimus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RASSF6

Ras association domain-containing protein 6 isoform X1. (335 aa)

Predicted Functional Partners:

STK3

0.943

RASSF7

0.640

TST

0.569

AJUBA

0.565

USP10

0.564

RASSF8

0.551

RASSF1

0.527

CCNJL

0.525

MPP5

0.524

RAVER2

0.522

Your Current Organism:

Ursus maritimus

NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJUBA	MPP5	ENSUMAP00000019181	ENSUMAP00000014491	LIM domain-containing protein ajuba.	MAGUK p55 subfamily member 5 isoform X1; Belongs to the MAGUK family.	0.543
AJUBA	RASSF6	ENSUMAP00000019181	ENSUMAP00000008759	LIM domain-containing protein ajuba.	Ras association domain-containing protein 6 isoform X1.	0.565
CCNJL	RASSF6	ENSUMAP00000000276	ENSUMAP00000008759	cyclin-J-like protein; Belongs to the cyclin family.	Ras association domain-containing protein 6 isoform X1.	0.525
MPP5	AJUBA	ENSUMAP00000014491	ENSUMAP00000019181	MAGUK p55 subfamily member 5 isoform X1; Belongs to the MAGUK family.	LIM domain-containing protein ajuba.	0.543
MPP5	RASSF6	ENSUMAP00000014491	ENSUMAP00000008759	MAGUK p55 subfamily member 5 isoform X1; Belongs to the MAGUK family.	Ras association domain-containing protein 6 isoform X1.	0.524
RASSF1	RASSF6	ENSUMAP00000030205	ENSUMAP00000008759	Ras association domain-containing protein 1.	Ras association domain-containing protein 6 isoform X1.	0.527
RASSF1	RASSF7	ENSUMAP00000030205	ENSUMAP00000007120	Ras association domain-containing protein 1.	LOW QUALITY PROTEIN: ras association domain-containing protein 7.	0.597
RASSF1	RASSF8	ENSUMAP00000030205	ENSUMAP00000004033	Ras association domain-containing protein 1.	Ras association domain-containing protein 8.	0.586
RASSF1	STK3	ENSUMAP00000030205	ENSUMAP00000023307	Ras association domain-containing protein 1.	Serine/threonine-protein kinase 3.	0.964
RASSF6	AJUBA	ENSUMAP00000008759	ENSUMAP00000019181	Ras association domain-containing protein 6 isoform X1.	LIM domain-containing protein ajuba.	0.565
RASSF6	CCNJL	ENSUMAP00000008759	ENSUMAP00000000276	Ras association domain-containing protein 6 isoform X1.	cyclin-J-like protein; Belongs to the cyclin family.	0.525
RASSF6	MPP5	ENSUMAP00000008759	ENSUMAP00000014491	Ras association domain-containing protein 6 isoform X1.	MAGUK p55 subfamily member 5 isoform X1; Belongs to the MAGUK family.	0.524
RASSF6	RASSF1	ENSUMAP00000008759	ENSUMAP00000030205	Ras association domain-containing protein 6 isoform X1.	Ras association domain-containing protein 1.	0.527
RASSF6	RASSF7	ENSUMAP00000008759	ENSUMAP00000007120	Ras association domain-containing protein 6 isoform X1.	LOW QUALITY PROTEIN: ras association domain-containing protein 7.	0.640
RASSF6	RASSF8	ENSUMAP00000008759	ENSUMAP00000004033	Ras association domain-containing protein 6 isoform X1.	Ras association domain-containing protein 8.	0.551
RASSF6	RAVER2	ENSUMAP00000008759	ENSUMAP00000011319	Ras association domain-containing protein 6 isoform X1.	LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding 2.	0.522
RASSF6	STK3	ENSUMAP00000008759	ENSUMAP00000023307	Ras association domain-containing protein 6 isoform X1.	Serine/threonine-protein kinase 3.	0.943
RASSF6	TST	ENSUMAP00000008759	ENSUMAP00000021572	Ras association domain-containing protein 6 isoform X1.	Sulfurtransferase.	0.569
RASSF6	USP10	ENSUMAP00000008759	ENSUMAP00000010110	Ras association domain-containing protein 6 isoform X1.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.564
RASSF7	RASSF1	ENSUMAP00000007120	ENSUMAP00000030205	LOW QUALITY PROTEIN: ras association domain-containing protein 7.	Ras association domain-containing protein 1.	0.597