STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6E3 ubiquitin-protein ligase RBBP6 isoform X1. (1771 aa)    
Predicted Functional Partners:
WDR33
pre-mRNA 3' end processing protein WDR33 isoform X1.
   
 
 0.982
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
    
 
 0.975
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.974
UBE3D
E3 ubiquitin-protein ligase E3D.
    
 0.968
SYMPK
Symplekin.
    
 
 0.965
FIP1L1
pre-mRNA 3'-end-processing factor FIP1.
    
 
 0.958
WDR82
WD repeat-containing protein 82.
    
 
 0.955
PCF11
pre-mRNA cleavage complex 2 protein Pcf11.
   
 
 0.953
CPSF4L
Putative cleavage and polyadenylation specificity factor subunit 4-like protein.
    
 
 0.858
CPSF4
Cleavage and polyadenylation specificity factor subunit 4 isoform X3.
    
 
 0.858
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.