STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGA1High mobility group protein HMG-I/HMG-Y isoform X1. (107 aa)    
Predicted Functional Partners:
MYBL1
Myb-related protein A isoform X1.
   
  
 0.642
ENSUMAP00000028257
annotation not available
   
 
 0.607
TAF11
Transcription initiation factor TFIID subunit 11 isoform X1.
      
 0.513
TPBG
Trophoblast glycoprotein.
      
 0.512
PACSIN1
LOW QUALITY PROTEIN: protein kinase C and casein kinase substrate in neurons protein 1.
      
 0.508
IGF2BP1
Insulin-like growth factor 2 mRNA-binding protein 1 isoform X1.
   
 
 0.469
ARID3B
LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3B.
      
 0.457
TCEAL5
Transcription elongation factor A protein-like 5.
      
 0.456
LOC103656283
Transcription elongation factor A protein-like 3.
      
 0.456
RGR
RPE-retinal G protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.456
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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