STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)    
Predicted Functional Partners:
PRPF6
LOW QUALITY PROTEIN: pre-mRNA-processing factor 6.
   
 0.999
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
   
 0.996
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.996
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.996
PRPF8
pre-mRNA-processing-splicing factor 8.
    
 0.994
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 0.992
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.987
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.985
MFAP1
Microfibrillar-associated protein 1.
   
 0.983
SNU13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.980
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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