STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD5Programmed cell death protein 5. (87 aa)    
Predicted Functional Partners:
PFDN1
Prefoldin subunit 1 isoform X1.
   
    0.809
RPS24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
    0.782
UVRAG
UV radiation resistance-associated gene protein.
      
 0.772
SALL4
Sal-like protein 4.
      
 0.772
RPS11
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
    0.748
ENSUMAP00000029928
annotation not available
   
    0.748
RPL11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
  
 0.744
PFDN4
Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.
   
   0.738
TGM3
LOW QUALITY PROTEIN: protein-glutamine gamma-glutamyltransferase E.
      
 0.729
SEMA3B
semaphorin-3B; Belongs to the semaphorin family.
      
 0.729
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.