STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROM1Retinal outer segment membrane protein 1. (371 aa)    
Predicted Functional Partners:
PRPH2
Peripherin-2.
  
 
0.883
RP1L1
Retinitis pigmentosa 1-like 1 protein.
   
  
 0.792
GNAT2
Guanine nucleotide-binding protein G(T) subunit alpha-2.
   
 
 0.757
GNAT1
LOW QUALITY PROTEIN: guanine nucleotide-binding protein G(T) subunit alpha-1.
   
 
 0.757
GNGT1
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.756
CCDC25
Coiled-coil domain-containing protein 25 isoform X1.
      
 0.742
RHO
Rhodopsin.
   
  
 0.695
GUCA1B
Guanylyl cyclase-activating protein 2.
   
  
 0.616
RHBDL2
Rhomboid-related protein 2; Belongs to the peptidase S54 family.
   
  
 0.611
RCVRN
Recoverin.
   
  
 0.602
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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