STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX38LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1218 aa)    
Predicted Functional Partners:
CDC40
pre-mRNA-processing factor 17.
   
 0.998
SYF2
pre-mRNA-splicing factor SYF2 isoform X1.
    
 0.996
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.996
SRRM2
Serine/arginine repetitive matrix protein 2 isoform X1.
    
 0.995
SLU7
SLU7 homolog, splicing factor.
   
 0.993
CWC25
CWC25 spliceosome associated protein homolog.
   
 0.993
PRPF8
pre-mRNA-processing-splicing factor 8.
   
 
 0.983
BUD31
Protein BUD31 homolog.
    
 0.979
CDC5L
Cell division cycle 5-like protein isoform X2.
 
 
 0.978
PRPF19
pre-mRNA-processing factor 19.
   
 0.976
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.