STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL5A2Collagen alpha-2(V) chain. (1165 aa)    
Predicted Functional Partners:
COL11A2
Collagen alpha-2(XI) chain.
 
 
 0.972
COL1A2
Collagen alpha-2(I) chain.
  
0.960
COL3A1
Collagen alpha-1(III) chain.
  
 
0.956
COL5A3
Collagen type V alpha 3 chain.
  
0.906
COL5A1
Collagen type V alpha 1 chain.
  
0.904
FBN1
Fibrillin-1.
   
 0.903
COL11A1
Collagen alpha-1(XI) chain isoform X4.
   
0.837
LUM
Lumican.
   
 0.800
BGN
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
   
 0.792
COL6A2
LOW QUALITY PROTEIN: collagen alpha-2(VI) chain.
  
0.790
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.