STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPDC3Popeye domain-containing protein 3. (291 aa)    
Predicted Functional Partners:
TSPYL2
LOW QUALITY PROTEIN: testis-specific Y-encoded-like protein 2; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.727
TPK1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
      
 0.643
RD3
Retinal degeneration 3, GUCY2D regulator.
      
 0.550
PTPRZ1
Receptor-type tyrosine-protein phosphatase zeta.
      
 0.518
KLHDC3
Kelch domain-containing protein 3.
      
 0.517
MROH9
Maestro heat-like repeat-containing protein family member 9.
      
 0.512
ANO5
Anoctamin.
   
 
 0.494
ANO6
Anoctamin.
   
 
 0.479
LIMS1
LIM and senescent cell antigen-like-containing domain protein; Adapter protein in a cytoplasmic complex linking beta- integrins to the actin cytoskeleton, bridges the complex to cell surface receptor tyrosine kinases and growth factor receptors.
      
 0.457
SF3B4
Splicing factor 3B subunit 4.
      
 0.453
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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