STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRIP1Fanconi anemia group J protein. (1262 aa)    
Predicted Functional Partners:
TOPBP1
DNA topoisomerase 2-binding protein 1 isoform X1.
   
 0.993
BRCA1
Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...]
   
 0.977
PALB2
Partner and localizer of BRCA2 isoform X1.
   
 0.966
BRCA2
LOW QUALITY PROTEIN: breast cancer type 2 susceptibility protein.
   
 0.964
PMS2
PMS1 homolog 2, mismatch repair system component.
   
 0.949
SLF1
Ankyrin repeat domain-containing protein 32 isoform X2.
   
 0.929
BARD1
BRCA1-associated RING domain protein 1.
   
 0.921
WRN
LOW QUALITY PROTEIN: Werner syndrome ATP-dependent helicase.
  
 0.882
MNAT1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
    
 0.858
GTF2H1
General transcription factor IIH subunit 1 isoform X1.
    
 0.853
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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