STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN8CLN8 transmembrane ER and ERGIC protein. (192 aa)    
Predicted Functional Partners:
CLN6
Ceroid-lipofuscinosis neuronal protein 6.
      
 0.788
CLN5
Ceroid-lipofuscinosis neuronal protein 5.
      
 0.770
CLN3
Battenin.
      
 0.755
PPT1
Palmitoyl-protein thioesterase 1.
      
 0.744
MFSD8
Major facilitator superfamily domain-containing protein 8 isoform X1.
      
 0.737
IFITM10
Interferon-induced transmembrane protein 10.
      
 0.724
ATXN7L3B
Putative ataxin-7-like protein 3B.
      
 0.724
CGGBP1
CGG triplet repeat-binding protein 1.
    
 
 0.665
TPP1
Tripeptidyl-peptidase 1.
    
 
 0.663
URB1
LOW QUALITY PROTEIN: nucleolar pre-ribosomal-associated protein 1.
      
 0.641
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.