STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRNT1CCA tRNA nucleotidyltransferase 1, mitochondrial; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (436 aa)    
Predicted Functional Partners:
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1.
  
  
 0.760
TRMT61A
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
  
  
 0.754
TRUB2
Probable tRNA pseudouridine synthase 2 isoform X1.
  
  
 0.752
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
      
 0.716
THG1L
tRNA(His) guanylyltransferase; Adds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage.
   
  
 0.704
PNPT1
Polyribonucleotide nucleotidyltransferase 1, mitochondrial.
  
 0.701
APMAP
Adipocyte plasma membrane-associated protein.
  
 0.694
LSM10
U7 snRNA-associated Sm-like protein LSm10.
      
 0.652
MOGS
Mannosyl-oligosaccharide glucosidase isoform X1.
      
 0.640
PHRF1
LOW QUALITY PROTEIN: PHD and RING finger domain-containing protein 1.
      
 0.639
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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