STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPHP4LOW QUALITY PROTEIN: nephrocystin-4. (1397 aa)    
Predicted Functional Partners:
NPHP1
LOW QUALITY PROTEIN: nephrocystin-1.
   
 0.995
RPGRIP1L
LOW QUALITY PROTEIN: protein fantom.
    
 0.994
RPGRIP1
LOW QUALITY PROTEIN: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1.
    
 0.963
LATS1
Serine/threonine-protein kinase LATS1 isoform X1.
    
 0.845
CEP290
Centrosomal protein of 290 kDa.
    
 
 0.833
LATS2
Non-specific serine/threonine protein kinase.
    
 0.825
TMEM67
Meckelin.
   
  
 0.811
INVS
Inversin isoform X1.
    
 
 0.789
TCTN1
Tectonic family member 1.
   
  
 0.784
IFT88
Intraflagellar transport protein 88 homolog isoform X1.
      
 0.782
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.