STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DBR1Lariat debranching enzyme. (542 aa)    
Predicted Functional Partners:
DHX38
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1.
    
 
 0.766
LTN1
E3 ubiquitin-protein ligase listerin.
      
 0.721
GPATCH11
G patch domain-containing protein 11.
   
 
 0.553
CWF19L1
CWF19-like protein 1 isoform X1.
   
 
0.553
UPF1
Regulator of nonsense transcripts 1 isoform X1.
      
 0.523
NEIL3
Endonuclease 8-like 3.
      
 0.513
XPO5
Exportin-5.
   
  
 0.496
EDC3
Enhancer of mRNA-decapping protein 3.
   
  
 0.488
ZNF296
Zinc finger protein 296.
      
 0.487
RSRC1
serine/Arginine-related protein 53.
      
 0.487
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.