STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3BRegulator of nonsense transcripts 3B isoform X1. (483 aa)    
Predicted Functional Partners:
UPF2
Regulator of nonsense transcripts 2 isoform X1.
   
 0.998
UPF1
Regulator of nonsense transcripts 1 isoform X1.
    
 0.990
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
    
 0.987
ALYREF
THO complex subunit 4.
    
 0.980
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.971
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.969
UPF3A
Regulator of nonsense transcripts 3A isoform X1.
  
  
0.963
SMG5
Protein SMG5 isoform X1.
   
 0.955
DDX5
Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
    
 0.942
CASC3
LOW QUALITY PROTEIN: protein CASC3.
    
 0.941
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.