STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDCBPSyntenin-1 isoform X1. (298 aa)    
Predicted Functional Partners:
PDCD6IP
Programmed cell death 6-interacting protein.
    
 0.937
NFASC
Neurofascin isoform X1.
     
 0.883
SDC4
Syndecan-4 isoform X1.
    
 
 0.813
CD63
Tetraspanin.
   
 0.644
CD81
Tetraspanin.
    
 0.547
CD9
Tetraspanin.
    
 0.537
EFNB1
ephrin-B1; Belongs to the ephrin family.
    
 0.536
FLOT1
Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.
      
 0.534
TSG101
Tumor susceptibility gene 101 protein.
   
  
 0.531
CASK
Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.
   
 0.522
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.