MTDH protein (Neomonachus schauinslandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MTDH

Protein LYRIC isoform X1. (613 aa)

Predicted Functional Partners:

SND1

0.936

NASP

0.818

SUOX

0.758

SLC35A4

0.644

EIF4E2

0.623

SLC25A23

0.620

LIN7C

0.618

TMEM214

0.617

RAB4B

0.533

BCL2L13

0.503

Your Current Organism:

Neomonachus schauinslandi

NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2L13	EIF4E2	A0A2Y9H4D8	A0A2Y9H9P6	Bcl-2-like protein 13 isoform X1.	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	0.531
BCL2L13	LIN7C	A0A2Y9H4D8	A0A2Y9GPB0	Bcl-2-like protein 13 isoform X1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.538
BCL2L13	MTDH	A0A2Y9H4D8	A0A2Y9H302	Bcl-2-like protein 13 isoform X1.	Protein LYRIC isoform X1.	0.503
BCL2L13	RAB4B	A0A2Y9H4D8	A0A2Y9I372	Bcl-2-like protein 13 isoform X1.	Ras-related protein Rab-4B.	0.514
BCL2L13	SLC25A23	A0A2Y9H4D8	A0A2Y9IAR1	Bcl-2-like protein 13 isoform X1.	Calcium-binding mitochondrial carrier protein SCaMC-3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.601
EIF4E2	BCL2L13	A0A2Y9H9P6	A0A2Y9H4D8	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	Bcl-2-like protein 13 isoform X1.	0.531
EIF4E2	LIN7C	A0A2Y9H9P6	A0A2Y9GPB0	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.685
EIF4E2	MTDH	A0A2Y9H9P6	A0A2Y9H302	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	Protein LYRIC isoform X1.	0.623
EIF4E2	RAB4B	A0A2Y9H9P6	A0A2Y9I372	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	Ras-related protein Rab-4B.	0.617
EIF4E2	SLC25A23	A0A2Y9H9P6	A0A2Y9IAR1	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	Calcium-binding mitochondrial carrier protein SCaMC-3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.659
LIN7C	BCL2L13	A0A2Y9GPB0	A0A2Y9H4D8	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Bcl-2-like protein 13 isoform X1.	0.538
LIN7C	EIF4E2	A0A2Y9GPB0	A0A2Y9H9P6	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	0.685
LIN7C	MTDH	A0A2Y9GPB0	A0A2Y9H302	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Protein LYRIC isoform X1.	0.618
LIN7C	RAB4B	A0A2Y9GPB0	A0A2Y9I372	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Ras-related protein Rab-4B.	0.644
LIN7C	SLC25A23	A0A2Y9GPB0	A0A2Y9IAR1	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	Calcium-binding mitochondrial carrier protein SCaMC-3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.777
MTDH	BCL2L13	A0A2Y9H302	A0A2Y9H4D8	Protein LYRIC isoform X1.	Bcl-2-like protein 13 isoform X1.	0.503
MTDH	EIF4E2	A0A2Y9H302	A0A2Y9H9P6	Protein LYRIC isoform X1.	Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.	0.623
MTDH	LIN7C	A0A2Y9H302	A0A2Y9GPB0	Protein LYRIC isoform X1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.618
MTDH	NASP	A0A2Y9H302	A0A2Y9GQ15	Protein LYRIC isoform X1.	Nuclear autoantigenic sperm protein isoform X3.	0.818
MTDH	RAB4B	A0A2Y9H302	A0A2Y9I372	Protein LYRIC isoform X1.	Ras-related protein Rab-4B.	0.533