TRMT11 protein (Neomonachus schauinslandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRMT11

tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1. (460 aa)

Predicted Functional Partners:

TRMT112

0.985

WDR36

0.822

LRRC19

0.796

DUS1L

0.795

ARMCX3

0.771

TMEM214

0.769

LOC110574183

0.767

WDR12

0.748

RPF2

0.746

RCL1

0.727

Your Current Organism:

Neomonachus schauinslandi

NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMCX3	LRRC19	A0A2Y9HM19	A0A2Y9GCI0	Armadillo repeat-containing X-linked protein 3.	Leucine-rich repeat-containing protein 19.	0.793
ARMCX3	TMEM214	A0A2Y9HM19	A0A2Y9HMR5	Armadillo repeat-containing X-linked protein 3.	Transmembrane protein 214.	0.748
ARMCX3	TRMT11	A0A2Y9HM19	A0A2Y9HAW3	Armadillo repeat-containing X-linked protein 3.	tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1.	0.771
DUS1L	RCL1	A0A2Y9GC36	A0A2Y9HE15	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	0.587
DUS1L	RPF2	A0A2Y9GC36	A0A2Y9HI80	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	Ribosome production factor 2 homolog isoform X1.	0.627
DUS1L	TRMT11	A0A2Y9GC36	A0A2Y9HAW3	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1.	0.795
DUS1L	WDR12	A0A2Y9GC36	A0A2Y9IAU2	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	Ribosome biogenesis protein WDR12.	0.455
DUS1L	WDR36	A0A2Y9GC36	A0A2Y9HI06	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	LOW QUALITY PROTEIN: WD repeat-containing protein 36.	0.797
LOC110574183	TRMT11	A0A2Y9GHB0	A0A2Y9HAW3	Sodium- and chloride-dependent creatine transporter 1-like.	tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1.	0.767
LRRC19	ARMCX3	A0A2Y9GCI0	A0A2Y9HM19	Leucine-rich repeat-containing protein 19.	Armadillo repeat-containing X-linked protein 3.	0.793
LRRC19	TMEM214	A0A2Y9GCI0	A0A2Y9HMR5	Leucine-rich repeat-containing protein 19.	Transmembrane protein 214.	0.770
LRRC19	TRMT11	A0A2Y9GCI0	A0A2Y9HAW3	Leucine-rich repeat-containing protein 19.	tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1.	0.796
RCL1	DUS1L	A0A2Y9HE15	A0A2Y9GC36	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	0.587
RCL1	RPF2	A0A2Y9HE15	A0A2Y9HI80	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	Ribosome production factor 2 homolog isoform X1.	0.887
RCL1	TRMT11	A0A2Y9HE15	A0A2Y9HAW3	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1.	0.727
RCL1	WDR12	A0A2Y9HE15	A0A2Y9IAU2	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	Ribosome biogenesis protein WDR12.	0.862
RCL1	WDR36	A0A2Y9HE15	A0A2Y9HI06	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	LOW QUALITY PROTEIN: WD repeat-containing protein 36.	0.991
RPF2	DUS1L	A0A2Y9HI80	A0A2Y9GC36	Ribosome production factor 2 homolog isoform X1.	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1.	0.627
RPF2	RCL1	A0A2Y9HI80	A0A2Y9HE15	Ribosome production factor 2 homolog isoform X1.	RNA 3'-terminal phosphate cyclase-like protein isoform X1.	0.887
RPF2	TRMT11	A0A2Y9HI80	A0A2Y9HAW3	Ribosome production factor 2 homolog isoform X1.	tRNA (Guanine(10)-N2)-methyltransferase homolog isoform X1.	0.746