STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TPM1Tropomyosin alpha-1 chain isoform X4; Belongs to the tropomyosin family. (284 aa)    
Predicted Functional Partners:
MYL1
Myosin light chain 1/3, skeletal muscle isoform.
   
 0.858
TNNI3
Troponin I, cardiac muscle isoform X1.
   
 0.756
TNNI2
Troponin I, fast skeletal muscle.
   
 0.743
TNNT1
Troponin T, slow skeletal muscle.
   
 0.733
TNNT2
Troponin T, cardiac muscle isoform X1.
   
 0.733
TNNT3
Troponin T, fast skeletal muscle isoform X1.
   
 0.733
SMIM20
Small integral membrane protein 20.
   
 0.729
KXD1
kxDL motif-containing protein 1.
   
   0.690
TNNI1
LOW QUALITY PROTEIN: troponin I, slow skeletal muscle.
   
 0.681
GATD1
Parkinson disease 7 domain-containing protein 1 isoform X1.
   
 0.675
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.