STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC1Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (307 aa)    
Predicted Functional Partners:
SDC4
Syndecan-4 isoform X1.
    
0.966
THBS1
Thrombospondin-1.
    
 0.960
GPC1
Glypican-1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.955
HPSE2
Inactive heparanase-2.
     
 0.953
HPSE
Heparanase.
     
 0.953
MMP9
Matrix metalloproteinase-9 isoform X1.
    
 0.950
FN1
Fibronectin isoform X7.
     
 0.945
THBS2
Thrombospondin-2.
    
 0.918
THBS4
Thrombospondin-4 isoform X1.
    
 0.915
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.911
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.