GSG1L protein (Neomonachus schauinslandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GSG1L

Germ cell-specific gene 1-like protein. (177 aa)

Predicted Functional Partners:

SHISA6

0.724

CLSTN2

0.720

STARD8

0.671

SYT17

0.643

DOC2A

0.621

SLC6A11

0.619

CPLX3

0.615

KSR1

0.604

LOC110571404

0.585

SLC6A13

0.585

Your Current Organism:

Neomonachus schauinslandi

NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLSTN2	GSG1L	A0A2Y9G5R9	A0A2Y9I242	Calsyntenin-2.	Germ cell-specific gene 1-like protein.	0.720
CPLX3	GSG1L	A0A2Y9HJD5	A0A2Y9I242	Complexin-3.	Germ cell-specific gene 1-like protein.	0.615
DOC2A	GSG1L	A0A2Y9HX17	A0A2Y9I242	Double C2-like domain-containing protein.	Germ cell-specific gene 1-like protein.	0.621
GSG1L	CLSTN2	A0A2Y9I242	A0A2Y9G5R9	Germ cell-specific gene 1-like protein.	Calsyntenin-2.	0.720
GSG1L	CPLX3	A0A2Y9I242	A0A2Y9HJD5	Germ cell-specific gene 1-like protein.	Complexin-3.	0.615
GSG1L	DOC2A	A0A2Y9I242	A0A2Y9HX17	Germ cell-specific gene 1-like protein.	Double C2-like domain-containing protein.	0.621
GSG1L	KSR1	A0A2Y9I242	A0A2Y9IC42	Germ cell-specific gene 1-like protein.	Kinase suppressor of Ras 1.	0.604
GSG1L	LOC110571404	A0A2Y9I242	A0A2Y9G8D2	Germ cell-specific gene 1-like protein.	LOW QUALITY PROTEIN: uncharacterized protein C14orf53 homolog.	0.585
GSG1L	SHISA6	A0A2Y9I242	A0A2Y9HKX1	Germ cell-specific gene 1-like protein.	Protein shisa-6 homolog.	0.724
GSG1L	SLC6A11	A0A2Y9I242	A0A2Y9HFT5	Germ cell-specific gene 1-like protein.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.619
GSG1L	SLC6A13	A0A2Y9I242	A0A2Y9H3M8	Germ cell-specific gene 1-like protein.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.585
GSG1L	STARD8	A0A2Y9I242	A0A2Y9G9U6	Germ cell-specific gene 1-like protein.	LOW QUALITY PROTEIN: stAR-related lipid transfer protein 8.	0.671
GSG1L	SYT17	A0A2Y9I242	A0A2Y9HQB4	Germ cell-specific gene 1-like protein.	Synaptotagmin-17 isoform X1.	0.643
KSR1	GSG1L	A0A2Y9IC42	A0A2Y9I242	Kinase suppressor of Ras 1.	Germ cell-specific gene 1-like protein.	0.604
LOC110571404	GSG1L	A0A2Y9G8D2	A0A2Y9I242	LOW QUALITY PROTEIN: uncharacterized protein C14orf53 homolog.	Germ cell-specific gene 1-like protein.	0.585
SHISA6	GSG1L	A0A2Y9HKX1	A0A2Y9I242	Protein shisa-6 homolog.	Germ cell-specific gene 1-like protein.	0.724
SHISA6	SLC6A11	A0A2Y9HKX1	A0A2Y9HFT5	Protein shisa-6 homolog.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.639
SHISA6	SLC6A13	A0A2Y9HKX1	A0A2Y9H3M8	Protein shisa-6 homolog.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.619
SLC6A11	GSG1L	A0A2Y9HFT5	A0A2Y9I242	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Germ cell-specific gene 1-like protein.	0.619
SLC6A11	SHISA6	A0A2Y9HFT5	A0A2Y9HKX1	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Protein shisa-6 homolog.	0.639