TAT protein (Neomonachus schauinslandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAT

Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (454 aa)

Predicted Functional Partners:

HPD

0.977

PAH

0.963

GOT2

0.961

GOT1

0.954

MAT2A

0.946

DDC

0.938

GOT1L1

0.935

MTR

0.935

BHMT

0.935

MAT1A

0.932

Your Current Organism:

Neomonachus schauinslandi

NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BHMT	GOT2	A0A2Y9HVH1	A0A2Y9I871	Betaine--homocysteine S-methyltransferase 1; Involved in the regulation of homocysteine metabolism.	Aspartate aminotransferase.	0.588
BHMT	MAT1A	A0A2Y9HVH1	A0A2Y9HV84	Betaine--homocysteine S-methyltransferase 1; Involved in the regulation of homocysteine metabolism.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.966
BHMT	MAT2A	A0A2Y9HVH1	A0A2Y9HP18	Betaine--homocysteine S-methyltransferase 1; Involved in the regulation of homocysteine metabolism.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.953
BHMT	MTR	A0A2Y9HVH1	A0A2Y9HQ11	Betaine--homocysteine S-methyltransferase 1; Involved in the regulation of homocysteine metabolism.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.951
BHMT	TAT	A0A2Y9HVH1	A0A2Y9I4K1	Betaine--homocysteine S-methyltransferase 1; Involved in the regulation of homocysteine metabolism.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.935
DDC	GOT1	A0A2Y9I6P8	A0A2Y9I1W8	aromatic-L-amino-acid decarboxylase.	Aspartate aminotransferase.	0.937
DDC	GOT1L1	A0A2Y9I6P8	A0A2Y9GDM7	aromatic-L-amino-acid decarboxylase.	Putative aspartate aminotransferase, cytoplasmic 2.	0.913
DDC	GOT2	A0A2Y9I6P8	A0A2Y9I871	aromatic-L-amino-acid decarboxylase.	Aspartate aminotransferase.	0.940
DDC	PAH	A0A2Y9I6P8	A0A2Y9GVI7	aromatic-L-amino-acid decarboxylase.	Phenylalanine-4-hydroxylase.	0.946
DDC	TAT	A0A2Y9I6P8	A0A2Y9I4K1	aromatic-L-amino-acid decarboxylase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.938
GOT1	DDC	A0A2Y9I1W8	A0A2Y9I6P8	Aspartate aminotransferase.	aromatic-L-amino-acid decarboxylase.	0.937
GOT1	GOT1L1	A0A2Y9I1W8	A0A2Y9GDM7	Aspartate aminotransferase.	Putative aspartate aminotransferase, cytoplasmic 2.	0.911
GOT1	GOT2	A0A2Y9I1W8	A0A2Y9I871	Aspartate aminotransferase.	Aspartate aminotransferase.	0.986
GOT1	HPD	A0A2Y9I1W8	A0A2Y9HWL7	Aspartate aminotransferase.	4-hydroxyphenylpyruvate dioxygenase.	0.937
GOT1	MAT1A	A0A2Y9I1W8	A0A2Y9HV84	Aspartate aminotransferase.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.707
GOT1	MAT2A	A0A2Y9I1W8	A0A2Y9HP18	Aspartate aminotransferase.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.707
GOT1	PAH	A0A2Y9I1W8	A0A2Y9GVI7	Aspartate aminotransferase.	Phenylalanine-4-hydroxylase.	0.952
GOT1	TAT	A0A2Y9I1W8	A0A2Y9I4K1	Aspartate aminotransferase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.954
GOT1L1	DDC	A0A2Y9GDM7	A0A2Y9I6P8	Putative aspartate aminotransferase, cytoplasmic 2.	aromatic-L-amino-acid decarboxylase.	0.913
GOT1L1	GOT1	A0A2Y9GDM7	A0A2Y9I1W8	Putative aspartate aminotransferase, cytoplasmic 2.	Aspartate aminotransferase.	0.911