STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ordLProbable oxidoreductase. (438 aa)    
Predicted Functional Partners:
PAU_01179
Fad dependent oxidoreductase.
  
  
 
0.928
PAU_02556
Conserved hypothetical protein.
 
  
 0.799
PAU_02208
Beta-alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.669
sypC2
Syringopeptin synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.559
PAU_00467
Similar to luxr family transcriptional regulators.
       0.529
PAU_00469
Conserved hypothetical protein.
  
    0.514
speB
Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
 
  
 0.506
goaG
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.482
syrE-2
Complete genome; Antibiotic synthesis; syringomycin synthetase.
  
  
 0.474
feaB
Phenylacetaldehyde dehydrogenase.
  
  
 0.454
Your Current Organism:
Photorhabdus asymbiotica
NCBI taxonomy Id: 291112
Other names: ATCC 43950, CIP 106331, DSM 15149, P. asymbiotica, strain 3265-86
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.