Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAU_03633Membrane protein. (151 aa)    
Predicted Functional Partners:
PAU_00871
Conserved hypothetical protein.
  
  
 0.567
PAU_03631
Membrane protein.
 
    0.566
PAU_00872
Conserved hypothetical protein.
  
  
 0.539
PAU_03630
Membrane protein.
  
    0.511
PAU_04188
Conserved hypothetical Protein.
  
     0.510
PAU_03632
Hypothetical Protein.
       0.475
pssR
Lysr-family transcriptional regulatory protein.
  
   
 0.459
mgtA
Magnesium-transporting ATPase, P-type 1.
   
  0.430
yqjA
Inner membrane protein yqja.
     
 0.402
Your Current Organism:
Photorhabdus asymbiotica
NCBI taxonomy Id: 291112
Other names: ATCC 43950, CIP 106331, DSM 15149, P. asymbiotica, strain 3265-86
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