STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arlSSignal transduction histidine-protein kinase ArlS. (526 aa)    
Predicted Functional Partners:
lpdA
Dihydrolipoyl dehydrogenase.
    
 0.988
cusR
Transcriptional regulatory protein CusR.
 
  0.971
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.960
ODN66940.1
Blue-light-activated protein.
 
 
 0.946
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.899
ODN67462.1
Blue-light-activated protein.
 
 
 0.893
srrA
Transcriptional regulatory protein SrrA.
  
  0.874
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
  0.871
kdpE
KDP operon transcriptional regulatory protein KdpE.
  
  0.869
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
  
  0.869
Your Current Organism:
Methylophaga muralis
NCBI taxonomy Id: 291169
Other names: M. muralis, Methylophaga muralis corrig. Doronina et al. 2011, Methylophaga murata, NCIMB 13993, VKM B-2303, strain Kr3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.