STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaTSialic acid TRAP transporter permease protein SiaT. (434 aa)    
Predicted Functional Partners:
ODN67306.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
 0.996
ODN67863.1
Monocarboxylate 2-oxoacid-binding periplasmic protein precursor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.826
ODN67305.1
Hypothetical protein.
       0.524
ODN67304.1
Hypothetical protein; Belongs to the UPF0246 family.
       0.515
ODN67308.1
Hypothetical protein.
       0.498
ODN67309.1
Hypothetical protein.
       0.498
ODN67302.1
Hypothetical protein.
       0.423
ydaM_1
Putative diguanylate cyclase YdaM.
       0.423
Your Current Organism:
Methylophaga muralis
NCBI taxonomy Id: 291169
Other names: M. muralis, Methylophaga muralis corrig. Doronina et al. 2011, Methylophaga murata, NCIMB 13993, VKM B-2303, strain Kr3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.