STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODN66969.1Zinc ribbon domain protein. (118 aa)    
Predicted Functional Partners:
fmdA
Formamidase.
 
     0.940
amiC_1
Aliphatic amidase expression-regulating protein.
 
     0.875
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
     0.815
ODN66972.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
     0.809
amdA
Acetamidase.
 
     0.765
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
     0.765
pleD_8
Response regulator PleD.
 
     0.732
livH_1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
     0.731
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
     0.727
feaR
Transcriptional activator FeaR.
 
     0.705
Your Current Organism:
Methylophaga muralis
NCBI taxonomy Id: 291169
Other names: M. muralis, Methylophaga muralis corrig. Doronina et al. 2011, Methylophaga murata, NCIMB 13993, VKM B-2303, strain Kr3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.