STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhB1Formate dehydrogenase iron-sulfur subunit. (194 aa)    
Predicted Functional Partners:
fdhA
Formate dehydrogenase subunit alpha precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.999
fdoI
Formate dehydrogenase, cytochrome b556(fdo) subunit.
 
 0.999
ynfF
Putative dimethyl sulfoxide reductase chain YnfF precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.990
fdhF
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.981
fdxA
Ferredoxin 7Fe.
 
 
 0.980
nasA
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.971
nqo1
NADH-quinone oxidoreductase subunit 1.
 
  
 0.918
torD
Chaperone protein TorD.
 
  
 0.901
fdhD
Formate dehydrogenase accessory protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.897
ODN66663.1
Putative FAD-linked oxidoreductase.
  
 
 0.820
Your Current Organism:
Methylophaga muralis
NCBI taxonomy Id: 291169
Other names: M. muralis, Methylophaga muralis corrig. Doronina et al. 2011, Methylophaga murata, NCIMB 13993, VKM B-2303, strain Kr3
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