STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_5Transcriptional regulatory protein ZraR. (461 aa)    
Predicted Functional Partners:
zraS_2
Sensor protein ZraS.
 0.992
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.959
ODN66940.1
Blue-light-activated protein.
 
0.953
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.917
ODN67462.1
Blue-light-activated protein.
0.865
glnL
Nitrogen regulation protein NR(II).
 0.864
fliE
Flagellar hook-basal body complex protein FliE.
 
  
 0.819
fliH
Flagellar assembly protein FliH.
  
 
 0.809
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.803
cph2_1
Phytochrome-like protein cph2.
  
 0.797
Your Current Organism:
Methylophaga muralis
NCBI taxonomy Id: 291169
Other names: M. muralis, Methylophaga muralis corrig. Doronina et al. 2011, Methylophaga murata, NCIMB 13993, VKM B-2303, strain Kr3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.