STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBRATIS_31140Dna-directed rna polymerase ii subunit rpb9. (121 aa)    
Predicted Functional Partners:
TUBRATIS_30360
DNA-directed RNA polymerase II.
   
 0.998
TUBRATIS_14030
DNA-directed RNA polymerases IV and V subunit 6A-like isoformX1.
   
 0.998
TUBRATIS_12500
DNA-directed RNA polymerases II and IV subunit 5A like.
   
 0.996
TUBRATIS_28490
DNA-directed RNA polymerase II subunit Rpb10.
   
 0.995
TUBRATIS_20030
DNA-directed RNA polymerase II subunit RPB3.
   
 0.995
TUBRATIS_15310
Subunit 7 of RNA polymerase II.
   
 0.995
TUBRATIS_10190
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.995
A0A437APD2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.995
TUBRATIS_20680
Abc-type multidrug transport atpase and permease component.
   
 0.988
TUBRATIS_12640
Transcription elongation factor S-II.
   
 0.980
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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