STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBRATIS_27860SNF2 DNA/RNA helicase. (151 aa)    
Predicted Functional Partners:
TUBRATIS_28550
Transcription regulatory protein.
 
   0.947
TUBRATIS_29190
SNF2-like helicase.
 
     0.929
A0A437ANP4
SNF2-like helicase.
 
     0.929
A0A437ANS5
DUF5097 domain-containing protein.
    
 0.861
TUBRATIS_24770
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
  0.815
TUBRATIS_21770
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.805
A0A437APZ0
Ribonucleotide reductase beta subunit.
   
  0.803
TUBRATIS_12510
Histone acetyltransferase.
   
 0.801
A0A437APK6
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.785
TUBRATIS_15590
Histone H2A.
    
 0.774
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.