STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBRATIS_22170LSM domain-containing protein. (91 aa)    
Predicted Functional Partners:
TUBRATIS_11500
U6 snRNA-associated Sm.
   
 0.992
A0A437ANY4
Sm domain-containing protein.
   
 0.992
A0A437API3
U6 snRNA-associated Sm LSm2.
   
 0.992
TUBRATIS_15070
mRNA decapping enzyme 2.
    
 0.906
TUBRATIS_11230
Uncharacterized protein.
    
 0.825
TUBRATIS_19790
YjeF N-terminal domain-containing protein.
    
 0.780
TUBRATIS_25320
ATP-dependent RNA helicase DDX39A.
    
 0.755
TUBRATIS_15220
Eukaryotic translation initiation factor 4A; Belongs to the DEAD box helicase family.
    
 0.723
A0A437ANX8
Sm domain-containing protein.
   
 
 0.668
A0A437ANE0
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.640
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.