STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBRATIS_20290Ubiquitin ligase skp1. (158 aa)    
Predicted Functional Partners:
TUBRATIS_30600
WD40 repeat-containing protein.
    
 0.995
TUBRATIS_10890
Uncharacterized protein.
   
 0.995
TUBRATIS_26930
F-box domain-containing protein.
   
 0.993
A0A437AQE6
Ring-box 1 protein.
   
 0.988
A0A437AN83
WD40 domain-containing protein.
    
 0.985
A0A437AMZ2
Serine threonine kinase.
    
 0.924
A0A437AQU2
Ribosomal L40.
    
  0.909
TUBRATIS_17930
Uncharacterized protein.
    
 0.907
TUBRATIS_25060
BRCT domain-containing protein.
    
 0.884
A0A437ANV0
60S ribosomal L8.
   
 0.881
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.