TUBRATIS_14000 protein (Tubulinosema ratisbonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TUBRATIS_14000

Superfamily II DNA RNA helicase. (673 aa)

Predicted Functional Partners:

A0A437APD2

0.979

TUBRATIS_31140

0.968

TUBRATIS_10190

0.966

TUBRATIS_26300

0.958

TUBRATIS_20030

0.928

TUBRATIS_14030

0.920

TUBRATIS_15310

0.918

TUBRATIS_12500

0.918

TUBRATIS_28490

0.913

TUBRATIS_30360

0.906

Your Current Organism:

Tubulinosema ratisbonensis

NCBI taxonomy Id: 291195
Other names: T. ratisbonensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A437APD2	TUBRATIS_10190	A0A437APD2	A0A437AMY9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
A0A437APD2	TUBRATIS_12500	A0A437APD2	A0A437AM56	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases II and IV subunit 5A like.	0.995
A0A437APD2	TUBRATIS_14000	A0A437APD2	A0A437ALN2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Superfamily II DNA RNA helicase.	0.979
A0A437APD2	TUBRATIS_14030	A0A437APD2	A0A437AM05	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases IV and V subunit 6A-like isoformX1.	0.995
A0A437APD2	TUBRATIS_15310	A0A437APD2	A0A437ALN3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Subunit 7 of RNA polymerase II.	0.995
A0A437APD2	TUBRATIS_20030	A0A437APD2	A0A437AK23	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.995
A0A437APD2	TUBRATIS_28490	A0A437APD2	A0A437AHX9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit Rpb10.	0.946
A0A437APD2	TUBRATIS_30360	A0A437APD2	A0A437AHI1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II.	0.946
A0A437APD2	TUBRATIS_31140	A0A437APD2	A0A437AH66	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Dna-directed rna polymerase ii subunit rpb9.	0.995
TUBRATIS_10190	A0A437APD2	A0A437AMY9	A0A437APD2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
TUBRATIS_10190	TUBRATIS_12500	A0A437AMY9	A0A437AM56	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases II and IV subunit 5A like.	0.997
TUBRATIS_10190	TUBRATIS_14000	A0A437AMY9	A0A437ALN2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Superfamily II DNA RNA helicase.	0.966
TUBRATIS_10190	TUBRATIS_14030	A0A437AMY9	A0A437AM05	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases IV and V subunit 6A-like isoformX1.	0.997
TUBRATIS_10190	TUBRATIS_15310	A0A437AMY9	A0A437ALN3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Subunit 7 of RNA polymerase II.	0.995
TUBRATIS_10190	TUBRATIS_20030	A0A437AMY9	A0A437AK23	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.998
TUBRATIS_10190	TUBRATIS_28490	A0A437AMY9	A0A437AHX9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit Rpb10.	0.995
TUBRATIS_10190	TUBRATIS_30360	A0A437AMY9	A0A437AHI1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II.	0.995
TUBRATIS_10190	TUBRATIS_31140	A0A437AMY9	A0A437AH66	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Dna-directed rna polymerase ii subunit rpb9.	0.995
TUBRATIS_12500	A0A437APD2	A0A437AM56	A0A437APD2	DNA-directed RNA polymerases II and IV subunit 5A like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
TUBRATIS_12500	TUBRATIS_10190	A0A437AM56	A0A437AMY9	DNA-directed RNA polymerases II and IV subunit 5A like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997