STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBRATIS_11230Uncharacterized protein. (115 aa)    
Predicted Functional Partners:
TUBRATIS_15070
mRNA decapping enzyme 2.
    
 0.991
TUBRATIS_19790
YjeF N-terminal domain-containing protein.
    
 0.985
A0A437APU5
ATP-dependent helicase upf1-like.
    
 0.864
A0A437ANY4
Sm domain-containing protein.
   
 0.829
TUBRATIS_22170
LSM domain-containing protein.
    
 0.825
A0A437API3
U6 snRNA-associated Sm LSm2.
    
 0.809
TUBRATIS_11500
U6 snRNA-associated Sm.
   
 0.788
A0A437AQ73
Exosome complex exonuclease RRP44.
    
 0.745
A0A437ANV9
RNase PH.
   
 0.732
TUBRATIS_12680
Ccch-type zn-finger.
    
 0.713
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.