Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A437API3U6 snRNA-associated Sm LSm2. (85 aa)    
Predicted Functional Partners:
TUBRATIS_22170
LSM domain-containing protein.
   
 0.997
TUBRATIS_11500
U6 snRNA-associated Sm.
   
 0.997
A0A437ANY4
Sm domain-containing protein.
   
 0.997
A0A437ANE0
Small nuclear ribonucleoprotein Sm D2.
   
 0.993
TUBRATIS_10310
Pre translocase subunit Sec63.
    
 0.987
A0A437ANX8
Sm domain-containing protein.
   
 0.986
TUBRATIS_15040
Sm domain-containing protein.
   
 0.965
A0A437AQ96
Processing splicing factor.
    
 0.947
TUBRATIS_15070
mRNA decapping enzyme 2.
    
 0.946
TUBRATIS_11230
Uncharacterized protein.
   
 0.924
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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