close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A437API4CMGC CDK CDK7 kinase. (313 aa)    
Predicted Functional Partners:
A0A437AP03
Cdk-activating kinase assembly factor mat1.
    
 0.991
TUBRATIS_13710
RNA polymerase II transcription initiation.
    
 0.988
TUBRATIS_25740
Transcription initiation factor TFIIE subunit.
   
 0.982
A0A437AQ02
Transcription initiation factor TFIIE subunit.
    
 0.981
A0A437APD2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.967
TUBRATIS_11930
Rad3-like DNA repair helicase.
    
 0.966
A0A437AQA2
RNA polymerase II transcription initiation.
   
 0.960
A0A437APK5
DNA repair helicase RAD25.
    
 0.955
A0A437APA3
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.942
TUBRATIS_20030
DNA-directed RNA polymerase II subunit RPB3.
   
 0.923
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
Server load: low (18%) [HD]