Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
A0A437API4CMGC CDK CDK7 kinase. (313 aa)    
Predicted Functional Partners:
A0A437AP03
Cdk-activating kinase assembly factor mat1.
    
 0.997
A0A437APK5
DNA repair helicase RAD25.
    
 0.993
A0A437AQA2
RNA polymerase II transcription initiation.
   
 0.993
TUBRATIS_13710
RNA polymerase II transcription initiation.
    
 0.990
A0A437APA3
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.989
A0A437APD2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.988
TUBRATIS_11930
Rad3-like DNA repair helicase.
    
 0.985
A0A437AQ02
Transcription initiation factor TFIIE subunit.
    
 0.974
TUBRATIS_25740
Transcription initiation factor TFIIE subunit.
   
 0.973
TUBRATIS_27800
TATA-box-binding protein.
    
 0.961
Your Current Organism:
Tubulinosema ratisbonensis
NCBI taxonomy Id: 291195
Other names: T. ratisbonensis
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