Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpsU30S ribosomal subunit protein S21; Ortholog to Escherichia coli bnum: b3065; MultiFun: Cell structure 6.6; Information transfer 2.3.2, 2.3.8; Belongs to the bacterial ribosomal protein bS21 family. (71 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal subunit protein L28; Ortholog to Escherichia coli bnum: b3637; MultiFun: Cell structure 6.6; Information transfer 2.3.2, 2.3.8; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.996
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.994
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.994
rplM
50S ribosomal subunitprotein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.992
rpsP
30S ribosomal subunit protein S16; Ortholog to Escherichia coli bnum: b2609; MultiFun: Cell structure 6.6; Information transfer 2.3.2, 2.3.8; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.992
rpsB
30S ribosomal subunit protein S2; Ortholog to Escherichia coli bnum: b0169; MultiFun: Cell structure 6.6; Information transfer 2.3.2, 2.3.8; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.990
rpmA
50S ribosomal subunit protein L27; Ortholog to Escherichia coli bnum: b3185; MultiFun: Cell structure 6.6; Information transfer 2.3.2, 2.3.8; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.989
rpsO
30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.989
rpmF
50S ribosomal subunit protein L32; Ortholog to Escherichia coli bnum: b1089; MultiFun: Cell structure 6.6; Information transfer 2.3.2, 2.3.8; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.989
rplY
50S ribosomal subunit protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
   
 
 0.989
Your Current Organism:
Blochmannia pennsylvanicus
NCBI taxonomy Id: 291272
Other names: C. Blochmannia pennsylvanicus str. BPEN, Candidatus Blochmannia pennsylvanicus BPEN, Candidatus Blochmannia pennsylvanicus str. BPEN, Candidatus Blochmannia pennsylvanicus strain BPEN
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